The Gene Project


YEAR:2022

SECRET SAUCE:Gene Sequences, Processing & Touch of audacity

REFERENCES:NCBI/Genome, NCBI/Nucleotide

#TAGS: thegeneproject, procedural


Exhibited: FotoFestival Eindhoven, Netherlands 2022 , Berlin Science Week, Germany 2022


Published on:Jan 20, 2022

Updated on: Oct 24, 2022


Primary motivation for me to undertake this project was my reluctance and lack of interest in biology in my early years of education. However, during my masters studies, I had the opportunity to work on a mini project with the aim of studying the periodicities using Fourier analysis in human genome. That was my first foray in biology-verse. One this is clear - Human Genome database is massive! Most of it might look random to an eye, but trust me collectively genes are the reasons we exist and traits we acquired from our parents. There is a order in chaos in-between all those basic building block know as Nucleotides. As a first chapter in my creative coding journey, an attempt is made to bring forth my impression of the beauty that exists in gene sequences.




The Gene Project




Excerpt: FotoFestival Eindhoven 2022, Netherlands





Excerpt: Berlin Science Week 2022, Germany





As we enter into the third year of pandemic, my curiosity was heightened as what might these virus genomes look like? It is well known that these entities have a very small set of nucleotides but the havoc they wreak in this world is becoming more evident lately.

Messenger ribonucleic acid (mRNA) is a single stranded molecule of RNA complimentary to one of the DNA strands of a gene. In short, they do most of the heavy lifting and kickstart the production of proteins in our bodies. Not so surprisingly, mRNA vaccines can also teach our cells to make a protein (like that filthy subunit of SARS-CoV2 - spike glycoprotien) that will trigger an immune response inside our bodies. Any mutations in mRNA (processes such as splicing, editing, modification, translation, and degradation) can result in entirely different sequence of amino acids and consequently lead to diseases in humans. The motif of this work is to create awareness to some genome-degenerative diseases. Recently, a close family friend was diagnosed with Parkinson's and it was disheartening to see him fight this invisible enemy. Most importantly, Schizophrenia run in my family and through these representations I tend to find peace with this thought.

HOMO SAPIENS PRKN


Diseases associated with PRKN include Parkinson Disease 2, Autosomal Recessive Juvenile and Leprosy 2. The precise function of this gene is unknown; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrate proteins for proteasomal degradation. Mutations in this gene are known to cause Parkinson disease and autosomal recessive juvenile Parkinson disease. Reference

Homo Sapiens APP/PSEN1/PSEN2


With the coming of an aging society, the number of Alzheimer’s disease (AD) is increasing rapidly. To date, only three causative genes have been identified in the pathogenesis of AD, including amyloid precursor protein (APP), presenilin1 (PSEN1), and presenilin2 (PSEN2). APP encodes a protein called amyloid-β protein precursor, whose proteolysis generates amyloid-β(Aβ), a key component of amyloid plaque. Additionally, presenilin-1 and presenilin-2 are encoded by PSEN1 and PSEN2, respectively. Both of them are subunits of γ-secretase and associated with either the increase of Aβ or the raised ratio of Aβ42 over Aβ40, causing the formation of amyloid plaques and leading to the development of AD. Reference

Homo Sapiens BRCA1/BRCA2


BRCA1 (BReast CAncer gene 1) and BRCA2 (BReast CAncer gene 2) are genes that produce proteins that help repair damaged DNA. Everyone has two copies of each of these genes—one copy inherited from each parent. BRCA1 and BRCA2 are sometimes called tumor suppressor genes because when they have certain changes, called harmful (or pathogenic) variants (or mutations), cancer can develop. About 13% of women in the general population will develop breast cancer sometime during their lives. By contrast, 55% - 72% of women who inherit a harmful BRCA1 variant and 45% - 69% of women who inherit a harmful BRCA2 variant will develop breast cancer by 70 - 80 years of age. The risk for any one woman depends on a number of factors, some of which have not been fully characterized. Please get a regular check-up for yourself or your partner. Reference

Mycobacterium leprae


Jan 30, World Leprosy Day. Today is World Leprosy Day. Hansen's disease (also known as leprosy) is an infection caused by slow-growing bacteria called Mycobacterium leprae. It can affect the nerves, skin, eyes, and lining of the nose (nasal mucosa). With early diagnosis and treatment, the disease can be cured. A skin biopsy is commonly used to diagnose leprosy. A skin biopsy involves removing a small section of skin for laboratory testing. If you have the symptoms of leprosy, a lepromin skin test may be ordered along with a biopsy to confirm both the presence and type of leprosy. Reference

Homo Sapiens SIRT6


Scientists recently found a gene variant in centenarians which appears to slow the ageing process. A rare variant of the SIRT6 gene increases DNA repair in human cells, and learning its effects could help to develop anti-ageing drugs. The study claims that SIRT6 is strongly linked to an increased lifespan in some human beings. Sirtuin 6 (SIRT6 or Sirt6) is a stress responsive protein deacetylase and mono-ADP ribosyltransferase enzyme encoded by the SIRT6 gene. In laboratory research, SIRT6 appears to function in multiple molecular pathways related to aging, including DNA repair, telomere maintenance, glycolysis and inflammation. Foods that contain Sirtuin activators include: green tea, turmeric, onions, kale, parsley, miso soup, tofu and other soy products, olives and extra-virgin olive oil, blackcurrants, capers, cocoa, dates, walnuts and turmeric. Read more here.

HLA DQ1 / DQ2


Three chromosomal mutations, known as HLA-DQ2, DQ1 and HLA-DQ8, are commonly associated with celiac disease. By definition, HLA (human leukocyte antigen) is a cellular protein which triggers an immune response. With celiac disease, aberrations in the HLA coding can cause the immune system to go haywire in the presence of gluten and attack cells of the small intestine. Despite the fact that HLA-DQ2 and HLA-DQ8 are both linked to this effect, having the mutation doesn't necessarily mean that you'll get the disease. Of those who do carry the mutation, only around 1 to 4 percent will go on to develop the disease in their adult years. With that being said, most celiac specialists will advise you and your family to be regularly monitored in the event one or more of you eventually become symptomatic. This is because the HLA mutations are passed from parent to child, with some children inheriting two copies of the mutation (one from each parent) while others only inheriting one. Those inheriting two are at greatest risk. Get your kids checked up at an early age to prevent escalation of disease. Read more here.


To be continued...